rs29422433 SNP Detail

Summary

• ID
  rs29422433
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101673661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGATAAACT CCATGCTAAA CAGTCATTCT CTGCCATCAT
  CACCACCACA ATAATAATAA TAAATAATAA TATGACAACA GCAATAATTT TATGTGTGTG
  W
  GTGTGTGTTT GAGACGATGG CCAAGACAGA CCTCATCCCA TTCCACAAAC CTACTTAGTG
  GTCCCCTTTC CTTCTTATCC AGGCTTCTCC TATAGAGAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38755840	mCV24853974	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
ss132730296	ENSMUSSNP2710040	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
ss323833815	CHEV_11_101644149	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29422433					SNP	T	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101673661 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	1231 bp proximal
Etv4	ets variant 4	within coordinates
Tssr110962	transcription start site region 110962	1450 bp downstream
Tssr110963	transcription start site region 110963	1487 bp downstream
Tssr110964	transcription start site region 110964	1592 bp downstream
Tssr110965	transcription start site region 110965	1625 bp downstream
Tssr110966	transcription start site region 110966	1681 bp downstream
Tssr110967	transcription start site region 110967	1773 bp downstream
Tssr110968	transcription start site region 110968	1831 bp downstream
Tssr110969	transcription start site region 110969	1978 bp downstream