rs29422977 SNP Detail

Summary

• ID
  rs29422977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115077902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCCCAC GCAGGGTGGA
  ACTCTTTCTG TAGCAGTGGA GCTATGTTGA CAGAAGAGCG TCCTGCCTTC CCCTCACAAC
  TACGTGAAAG AACGGGGATT CTAAAACTCT TGTAAGAGAA AGAGCCGAAG TGGTCAATAC
  ATCTGGGCTC TCACCCAGGG GCCAAGTTCT GGCTCGGTTT CCAGCCCATT CCTACACAAC
  R
  TGCCCGTCCA CCCCCAAATG ACCTGTTAAT CCTTTTTTTA ACCTGTTTCC AACCCTAGCC
  TCCAGCGTCC AGAGTCCACG TCACTCGGCT CTGGCCCTTC CGTTTTCCTG TCCCCAAGCC
  CCACTCAAAG TTCTCAGGCC TCAGCCCTTT GCGTGGTTCC TCGGCCGTCT AAGCGCTGTA
  GTTTGCAAAC TGCAAAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38759626	mCV22628611	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss132872452	ENSMUSSNP2244350	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323861635	CHEV_11_115048390	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29422977					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115077902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	within coordinates
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	within coordinates
Rr403112	regulatory region 403112	126 bp upstream
Rr459794	regulatory region 459794	246 bp proximal
Rr459795	regulatory region 459795	422 bp proximal
Rr459796	regulatory region 459796	758 bp proximal
Rr459797	regulatory region 459797	1513 bp proximal
Rr459798	regulatory region 459798	1643 bp proximal
Tmem104	transmembrane protein 104	411 bp upstream
Tssr3728	transcription start site region 3728	492 bp upstream
Tssr3729	transcription start site region 3729	1579 bp downstream
Tssr105849	transcription start site region 105849	405 bp upstream
Tssr111731	transcription start site region 111731	182 bp downstream
Tssr111732	transcription start site region 111732	214 bp downstream
Tssr111733	transcription start site region 111733	245 bp downstream
Tssr111734	transcription start site region 111734	751 bp downstream
Tssr111735	transcription start site region 111735	783 bp downstream
Tssr111736	transcription start site region 111736	1688 bp downstream