rs29423047 SNP Detail

Summary

• ID
  rs29423047
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88901564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT GTGTGTGGGG GGGGGGGTCT
  W
  TGAGGATGCA TCCCAAACCC TGGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38760407	mCV22658244	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss132549895	ENSMUSSNP1312258	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29423047					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88901564 () rs orientation: forward

Symbol	Name	Function Class
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	155 bp upstream
Tssr104067	transcription start site region 104067	231 bp upstream