rs29423259 SNP Detail

Summary

• ID
  rs29423259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69049382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCAAGGA CCCCTGGTAC
  TGCAACTATG TGCAGATCTG TGCTCCCGAC TGCCGTGTCT ACCACTTCCC AGCTTACCAG
  TGGATGGATG GCTATGAGAC CCTGGCACTC CGGGAGGCCA CAGGTGAGCC AGCACTGACC
  ACCTCATCCC ATGCAGGGAG TTTCCTTACT CTTGCCCAGC TACTCCAGAT TGGCCACTTC
  R
  GGATCCCATC AAGTCAATCA GGCATGGCCA GCCTTAGTGC CCATTGCTGC TCTGGGCTTA
  GCTTAGGGCT GCACAGTGAA GGAACCCAAG TGTATGAGGC CCAGGGAGTA CTACCAGCTC
  ATGCAGAGAG CACTATCAGC CTCATGCAGA GAGCATTCCC AGATCCTGAG GTCCAGGGAA
  CTCTATCAAC TCATTCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38758448	mCV24154645	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss132350052	ENSMUSSNP3140478	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29423259					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69049382 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	1221 bp distal
Rr449891	regulatory region 449891	1557 bp distal
Rr449892	regulatory region 449892	1286 bp distal
Rr449893	regulatory region 449893	426 bp distal
Tssr102419	transcription start site region 102419	1655 bp downstream
Tssr102420	transcription start site region 102420	1640 bp downstream
Tssr102421	transcription start site region 102421	1505 bp downstream
Tssr102422	transcription start site region 102422	1495 bp downstream
Tssr102423	transcription start site region 102423	1475 bp downstream
Tssr102424	transcription start site region 102424	1446 bp downstream