rs29423401 SNP Detail

Summary

• ID
  rs29423401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6020365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGACCAT AACCCTGGGC
  AGGGGGAGGG AGGTGAGAGT AGCTGCACTC CTAGGCTACA GCTTGGTGTC ACTTGCTTAG
  TGTCACTCCT CCGGTGCCCT GCTTAGGCTT CTGTCTGGTT GAGGTTCTCT GGAACACTCC
  TGGTACTCCC TGAACCCTTG GTGAGTTGGA CCCTTTCAGT GTGACCTCAC CATGCCTATT
  Y
  TGATTGACGT TACCTCTGTT CTCTTGGAAC AGCCTAGGGA CTGGAAGTAG AACACATGAC
  ACCATCCCAG CTCAACACGA CCCAATCATT TATACTAGCA GCAGTGACTA TAGTGACAGG
  GCATGTCCAA ATGACCAGGA GGGGCCAAGG ACAGCCTCAG CTCCTCGTTA CTGAACACTA
  GGGCTTGCCA GCATGGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38760445	mCV22808072	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss131641311	ENSMUSSNP6301363	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29423401					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6020365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2552	CpG island 2552	1905 bp distal
Gm74282	predicted gene, 74282	1300 bp upstream
Rr442232	regulatory region 442232	1836 bp distal
Rr442233	regulatory region 442233	1335 bp distal
Rr442234	regulatory region 442234	1213 bp distal