rs29423510 SNP Detail

Summary

• ID
  rs29423510
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69299042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTCAC CTGCCTCCGG
  GCAGCCATGA GCTTCGGGGA GGAGGATGGG GTGGGCAGGA GCTCCAAGCC CCAGCACAGC
  TCAAGCCCCC AAGGGCAAAG GCTTCCCGTG CAGAGCGGGC CCCTGGAGGG TCCACTGCCC
  GATGCATCCA GCCTAAATCA GCGACAAGAG ATCATGCTCT AACAGGGAAG CAAAAACCTT
  M
  AGCCATGTTT TCAGCCAAAC CTGTTCCAAT CTTTCCCTTA CCAGGTCAGC AGTGGCCCCA
  GGAGCCCTGG AGATGGGGCA CGGCCCCCTG CCCCAGCTCT CTGGCACGAT GGTCCAGCTC
  CAACTGCCCT TAACAATAGT GCCCACTGTT TCCAGGTGAC AGTCTCTGGC CTTCTGCAAC
  CAATTCTACA GAGAGAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38760273	mCV22780235	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss132355561	ENSMUSSNP6256006	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29423510					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69299042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	303 bp proximal
Gm72933	predicted gene, 72933	1538 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1658 bp upstream
Rr402670	regulatory region 402670	379 bp upstream
Rr402671	regulatory region 402671	1143 bp upstream
Tssr3543	transcription start site region 3543	464 bp downstream
Tssr102455	transcription start site region 102455	1338 bp downstream
Tssr102456	transcription start site region 102456	695 bp upstream
Tssr102457	transcription start site region 102457	1065 bp upstream
Tssr102458	transcription start site region 102458	1458 bp upstream
Tssr102459	transcription start site region 102459	1478 bp upstream
Tssr102460	transcription start site region 102460	1511 bp upstream
Tssr102461	transcription start site region 102461	1554 bp upstream
Tssr102462	transcription start site region 102462	1582 bp upstream
Tssr108661	transcription start site region 108661	1446 bp upstream
Tssr108662	transcription start site region 108662	596 bp upstream
Tssr108663	transcription start site region 108663	567 bp upstream
Tssr108664	transcription start site region 108664	385 bp upstream
Tssr108665	transcription start site region 108665	342 bp downstream
Tssr108666	transcription start site region 108666	930 bp downstream
Tssr108667	transcription start site region 108667	1176 bp downstream
Tssr108668	transcription start site region 108668	1197 bp downstream
Tssr108669	transcription start site region 108669	1212 bp downstream
Tssr108670	transcription start site region 108670	1331 bp downstream
Tssr108671	transcription start site region 108671	1668 bp downstream