rs29423522 SNP Detail

Summary

• ID
  rs29423522
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73128712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCACGC ACACCAATTC
  CCTCCTGACA CAGTGGTTGC TGTTGCTGCA GCTGTGTGGA AGGGCAGAGT CGGGTGCTAT
  GTGTGGCTGC TGGCACCCAG TACAGAAGTT TTGCAGTACG GATGGGGTCA TTCTTCTCCT
  CTGTGAATAC AAACTGCGTG GCTCTTTGGG GGCTTGGTCA TCCTCATCGG TCTTGATACT
  S
  AGTTCCTCCA CAATGCGTCT CTACTCTGAT ATGGGGATGT AGGAAGAACA GACCAGGCAG
  CTGAGCACTC CAGACCTGGC TGGCTCTAGG TGGGAAGCCT GGCCACTGTG ACCACAGAGC
  CTGCTGATCA CTGCAGTTGT TTCCCCGGGG CTGCTGAAGT GGGAGGCACA GCTCTGAAAA
  CTTTAGTTCT TCAGGGCACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38761896	mCV25414418	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G	G
ss132423058	ENSMUSSNP6401312	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29423522					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73128712 () rs orientation: forward

Symbol	Name	Function Class
Rr236157	regulatory region 236157	312 bp distal
Rr251456	regulatory region 251456	113 bp distal
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates