rs29423627 SNP Detail

Summary

• ID
  rs29423627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC CAAACAGGGG GAACTCTGGC
  R
  GCCAGAAGTC CCACCGCCCC TAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38759678	mCV23860865	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132181280	ENSMUSSNP5648886	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323685763	CHEV_11_57643981	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29423627					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	737 bp distal
Cpgi2912	CpG island 2912	756 bp proximal
Gm32915	predicted gene, 32915	1629 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447812	regulatory region 447812	1962 bp distal
Rr447813	regulatory region 447813	995 bp distal
Rr447814	regulatory region 447814	within coordinates
Rr447815	regulatory region 447815	1658 bp proximal
Tssr3506	transcription start site region 3506	1208 bp upstream
Tssr101646	transcription start site region 101646	1207 bp upstream
Tssr101647	transcription start site region 101647	1215 bp upstream
Tssr101648	transcription start site region 101648	1228 bp upstream
Tssr108123	transcription start site region 108123	1516 bp upstream
Tssr108124	transcription start site region 108124	1459 bp upstream
Tssr108125	transcription start site region 108125	1414 bp upstream
Tssr108126	transcription start site region 108126	1233 bp upstream
Tssr108127	transcription start site region 108127	1166 bp upstream
Tssr108128	transcription start site region 108128	1154 bp upstream
Tssr108129	transcription start site region 108129	1019 bp upstream
Tssr108130	transcription start site region 108130	1284 bp downstream
Tssr108131	transcription start site region 108131	1525 bp downstream
Tssr108132	transcription start site region 108132	1605 bp downstream
Tssr108133	transcription start site region 108133	1663 bp downstream