rs29423917 SNP Detail

Summary

• ID
  rs29423917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70909218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCTATATA GACCACTTAC TTGAAAATGT TTAAAAATTA
  ATTCAGGATT GAAGTATAAC TGAAAAGGTG TGATCAATTC CAACTGCTGA AATGGAAAAA
  R
  AGCTTCTTGA AGCCGATCAA CCGCAAAACA AAATTTCATC ATGAACCACG AAGGATGAGT
  AGATCTAATC ATTTCTGTCC CTTGGAATAC ATTTCTGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38762343	mCV24105030	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss323738899	CHEV_11_70831894	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29423917					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70909218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	572 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1219 bp upstream
Rr369277	regulatory region 369277	1387 bp upstream
Rr402697	regulatory region 402697	813 bp upstream
Rr450471	regulatory region 450471	840 bp proximal
Rr450472	regulatory region 450472	1230 bp proximal
Rr450473	regulatory region 450473	1439 bp proximal
Tssr102806	transcription start site region 102806	1178 bp upstream
Tssr102807	transcription start site region 102807	1201 bp upstream
Tssr102808	transcription start site region 102808	1234 bp upstream
Tssr102809	transcription start site region 102809	1249 bp upstream
Tssr102810	transcription start site region 102810	1476 bp upstream
Tssr102811	transcription start site region 102811	1503 bp upstream
Tssr109052	transcription start site region 109052	106 bp downstream
Tssr109053	transcription start site region 109053	841 bp downstream
Tssr109054	transcription start site region 109054	878 bp downstream