rs29424486 SNP Detail

Summary

• ID
  rs29424486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72853913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGAGAGGA TACTGGCTTG GCATGTGACA GAGCAGGCAG
  AAAACACTGG CAGGGGTGTT TCAGGTGCCT CTGCATTGAT GCTGTTACTA GTAAAAGCTC
  Y
  GACTTCATTG AGTAACTGCT TCGTGTCAGA AGCAGCTCTC AGAACTTCTC ATCAATTAGC
  TCATTTCTTC TTCCAAACAG CTCTGAAGTA AGGACTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38759534	mCV22672674	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29424486					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72853913 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	within coordinates
Cpgi3227	CpG island 3227	1185 bp distal
Rr402707	regulatory region 402707	601 bp upstream
Rr450780	regulatory region 450780	1908 bp distal
Rr450781	regulatory region 450781	606 bp distal
Rr450782	regulatory region 450782	within coordinates
Tssr102862	transcription start site region 102862	1908 bp downstream
Tssr102863	transcription start site region 102863	1859 bp downstream