rs29424776 SNP Detail

Summary

• ID
  rs29424776
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105346404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAATTC CTCTCTAGCA
  TAAATTTCCA GGGAATTCAG ACTGAGACAC CCTGACTAAG GAGAGCAGGA ATAAGGACAG
  ACTACATTCC TTTCCAGTCT CTAAAAGTAT CACACATGTG TGCATACATG CACATGTGCA
  TGCCTGTGTA CATGCTGTCT CCTTTTTCTG TGACTACATT TGTCAAAAAA AAAAAAAAAA
  M
  AAAAAACAAA AGATAAAAAC CACACCTGAC CTGAAAGAAG TGCTTTTAAA ATAAGCTGTC
  TTACCGTTTT CTTGCAATGC TCGCTCTGTG AAATATCATT AAAACTATAC TGTCTTGATT
  TTGGCAAATA AGCAAAATGT AAATTTAACC TCTCTATACT GAAGCTTCAT TTGAGGCAAG
  ATATAAGTAG CTGTGTTACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38766773	mCV24767677	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29424776					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105346404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	870 bp proximal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	within coordinates
Rr457973	regulatory region 457973	633 bp proximal
Rr457974	regulatory region 457974	1147 bp proximal
Tssr3699	transcription start site region 3699	1181 bp downstream
Tssr111262	transcription start site region 111262	290 bp upstream
Tssr111263	transcription start site region 111263	253 bp upstream
Tssr111264	transcription start site region 111264	1096 bp downstream