rs29424882 SNP Detail

Summary

• ID
  rs29424882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69870515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTAAGCGT TTACTGCTCT CTTTTGTTGA GTGAGCAACA
  GCCTCATTCA TGTCCCTTCA GTCAAGCCGG CAAGCTGGTG CTAAAGTCTC TAAAAAAAAC
  Y
  CATCTCGCTA GTCTTTTAAT TTTTACTGTT CCAAACCCTA CGATACCAGT TTCTCCACAG
  TATGAGATTC TGTGCTGTCT GTTGAAGAGA CGTCCTTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38767001	mCV23934512	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29424882					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69870515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	390 bp proximal
Ctdnep1	CTD nuclear envelope phosphatase 1	1479 bp upstream
Elp5	elongator acetyltransferase complex subunit 5	within coordinates
Gm56228	predicted gene, 56228	1003 bp upstream
Rr369263	regulatory region 369263	214 bp upstream
Rr402684	regulatory region 402684	827 bp upstream
Rr450182	regulatory region 450182	583 bp proximal
Rr450183	regulatory region 450183	977 bp proximal
Rr450184	regulatory region 450184	1553 bp proximal
Tssr102587	transcription start site region 102587	1062 bp upstream
Tssr102588	transcription start site region 102588	1079 bp upstream
Tssr102589	transcription start site region 102589	1091 bp upstream
Tssr102590	transcription start site region 102590	1141 bp upstream
Tssr102591	transcription start site region 102591	1350 bp upstream
Tssr102592	transcription start site region 102592	1438 bp upstream
Tssr102593	transcription start site region 102593	1566 bp upstream
Tssr102594	transcription start site region 102594	1643 bp upstream
Tssr102595	transcription start site region 102595	1692 bp upstream
Tssr102596	transcription start site region 102596	1771 bp upstream
Tssr102597	transcription start site region 102597	1786 bp upstream
Tssr102598	transcription start site region 102598	1802 bp upstream
Tssr102599	transcription start site region 102599	1833 bp upstream
Tssr108900	transcription start site region 108900	529 bp downstream
Tssr108901	transcription start site region 108901	544 bp downstream
Tssr108902	transcription start site region 108902	585 bp downstream
Tssr108903	transcription start site region 108903	779 bp downstream
Tssr108904	transcription start site region 108904	1539 bp downstream
Tssr108905	transcription start site region 108905	1553 bp downstream
Tssr108906	transcription start site region 108906	1592 bp downstream