rs29424898 SNP Detail

Summary

• ID
  rs29424898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT TAGTATAGAA GGGGCCTTCT
  R
  ATGCTGGGGT GTCACAAGGA GGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38768168	mCV22890656	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss132650937	ENSMUSSNP2721920	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29424898					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844485 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	617 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	190 bp distal
Gm74287	predicted gene, 74287	592 bp downstream
Gm74290	predicted gene, 74290	1752 bp upstream
Tssr3647	transcription start site region 3647	1675 bp downstream
Tssr104288	transcription start site region 104288	1995 bp downstream
Tssr104289	transcription start site region 104289	1987 bp downstream
Tssr104290	transcription start site region 104290	1939 bp downstream
Tssr104291	transcription start site region 104291	1924 bp downstream
Tssr104292	transcription start site region 104292	1827 bp downstream
Tssr104293	transcription start site region 104293	1720 bp downstream
Tssr104294	transcription start site region 104294	1686 bp downstream
Tssr104295	transcription start site region 104295	1642 bp downstream
Tssr104296	transcription start site region 104296	1618 bp downstream
Tssr104297	transcription start site region 104297	1595 bp downstream
Tssr104298	transcription start site region 104298	1561 bp downstream
Tssr104299	transcription start site region 104299	1527 bp downstream
Tssr104300	transcription start site region 104300	1507 bp downstream
Tssr104301	transcription start site region 104301	1387 bp downstream
Tssr104302	transcription start site region 104302	1373 bp downstream
Tssr104303	transcription start site region 104303	1354 bp downstream
Tssr104304	transcription start site region 104304	1312 bp downstream
Tssr104305	transcription start site region 104305	1290 bp downstream
Tssr104306	transcription start site region 104306	1275 bp downstream
Tssr104307	transcription start site region 104307	1258 bp downstream
Tssr104308	transcription start site region 104308	1185 bp downstream
Tssr104309	transcription start site region 104309	1161 bp downstream
Tssr104310	transcription start site region 104310	1075 bp downstream
Tssr104311	transcription start site region 104311	1026 bp downstream
Tssr104312	transcription start site region 104312	957 bp downstream
Tssr104313	transcription start site region 104313	941 bp downstream
Tssr104314	transcription start site region 104314	536 bp downstream
Tssr104315	transcription start site region 104315	1750 bp upstream
Tssr110229	transcription start site region 110229	1989 bp upstream
Tssr110230	transcription start site region 110230	1952 bp upstream