rs29425017 SNP Detail

Summary

• ID
  rs29425017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA GAACCTTGTA AAAGGAAGAA
  R
  GACAGTGTTC ACCCCTGGGA AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38769978	mCV23357638	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss132359132	ENSMUSSNP5749526	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29425017					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491604 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	1039 bp distal
Rr450034	regulatory region 450034	1168 bp distal
Rr450035	regulatory region 450035	116 bp distal
Tssr3544	transcription start site region 3544	74 bp upstream
Tssr102487	transcription start site region 102487	738 bp downstream
Tssr102488	transcription start site region 102488	385 bp upstream
Tssr102489	transcription start site region 102489	460 bp upstream
Tssr108712	transcription start site region 108712	760 bp upstream
Tssr108713	transcription start site region 108713	609 bp upstream
Tssr108714	transcription start site region 108714	541 bp upstream
Tssr108715	transcription start site region 108715	507 bp upstream
Tssr108716	transcription start site region 108716	203 bp upstream
Tssr108717	transcription start site region 108717	189 bp upstream
Tssr108718	transcription start site region 108718	125 bp upstream
Tssr108719	transcription start site region 108719	123 bp upstream
Tssr108720	transcription start site region 108720	107 bp upstream
Tssr108721	transcription start site region 108721	98 bp upstream
Tssr108722	transcription start site region 108722	20 bp upstream
Tssr108723	transcription start site region 108723	3 bp downstream
Tssr108724	transcription start site region 108724	56 bp downstream
Tssr108725	transcription start site region 108725	80 bp downstream
Tssr108726	transcription start site region 108726	175 bp downstream
Tssr108727	transcription start site region 108727	197 bp downstream
Tssr108728	transcription start site region 108728	241 bp downstream
Tssr108729	transcription start site region 108729	328 bp downstream
Tssr108730	transcription start site region 108730	360 bp downstream
Tssr108731	transcription start site region 108731	391 bp downstream
Tssr108732	transcription start site region 108732	452 bp downstream
Tssr108733	transcription start site region 108733	1674 bp downstream
Tssr108734	transcription start site region 108734	1965 bp downstream