rs29425212 SNP Detail

Summary

• ID
  rs29425212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69805594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACCGCCTTGC CACTTCCCCG TTCTGATTCT TCAGAGGAGG AAGAGGTGGA
  Y
  AAGATGATGG AACAGAAGAT GAAAGAAGAG CAGGAGAGAA GAAAGAAAAA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38765025	mCV23933423	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss323732164	CHEV_11_69728270	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29425212					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69805594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	59 bp distal
Eif5a	eukaryotic translation initiation factor 5A	1946 bp downstream
Gm72765	predicted gene, 72765	1944 bp upstream
Gps2	G protein pathway suppressor 2	within coordinates
Neurl4	neuralized E3 ubiquitin protein ligase 4	946 bp downstream
Rr235842	regulatory region 235842	1007 bp proximal
Rr247070	regulatory region 247070	within coordinates
Rr402680	regulatory region 402680	680 bp downstream
Tssr102552	transcription start site region 102552	690 bp downstream
Tssr102553	transcription start site region 102553	605 bp downstream
Tssr102554	transcription start site region 102554	575 bp downstream
Tssr102555	transcription start site region 102555	502 bp downstream
Tssr102556	transcription start site region 102556	471 bp downstream
Tssr102557	transcription start site region 102557	1272 bp upstream