rs29425383 SNP Detail

Summary

• ID
  rs29425383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102210596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGCCCG ACTCCTCGCT
  CTCCTGTCGG GGCGGGCAAG GCAGCTTGAG GCCGGAGGGG GATCTGTGAG GGATCCTGCC
  TGCTCCCTCT CCCATTGCTC CATCCTTGCT GTCTCCTGCC TCCTCCTCTC CTGCGTTTTT
  CCAACTCTCC CCTGTCGCCA CTGGTGTGTG TCTGTGTGCG CAGGTTTTCT CTCTCTCTCT
  Y
  TTTTTTTTTT TTTTTATTGC TTTGCTTTTG CAACCCTGAA GCTAAAGCGG GATGGGGGCG
  AAGGGGAATG TTACAAAAAA GAAAAAGGGA AAAAAAAAAG CCTCCTAGGT TTGCAACGTA
  TGAAAATACC CGGGAAGTAC CCCGCCTCGT TTGGGTCTCG GTGCCCGGCG AGGGCCTTCC
  GGATTTCAGA GCCAGTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38768008	mCV23672142	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29425383					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102210596 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	within coordinates
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr111028	transcription start site region 111028	1985 bp upstream
Tssr111029	transcription start site region 111029	1954 bp upstream
Tssr111030	transcription start site region 111030	1893 bp upstream
Tssr111031	transcription start site region 111031	1709 bp upstream
Tssr111032	transcription start site region 111032	766 bp upstream
Tssr111033	transcription start site region 111033	665 bp upstream
Tssr111034	transcription start site region 111034	421 bp upstream
Tssr111035	transcription start site region 111035	324 bp upstream
Tssr111036	transcription start site region 111036	55 bp downstream
Tssr111037	transcription start site region 111037	495 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	28 bp upstream