rs29425589 SNP Detail

Summary

• ID
  rs29425589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6337372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATAAACA GAATTGCAGG
  GTATCCCCGA GTCCATTACT GGATAAACAC AATGGGCTGT CTCCATGCAA TGAGACCCTC
  TTCTCCCATA AAAAGGAGGG AAATTCTGGC AGCAACTGAA GATGCATGCC TGCAATCTCA
  GTCCTCGAGG GCCTTAGGCA AAGAGGATTG GCTGCAAGTT CAAGGCTAGC CTGAGCCAGT
  R
  TGAGAACCTG TTTCAACCTC TCCCCAACCA AAGAAGTTCT GACACACAGA TGAGCCTTGA
  GGTCACAAAG CTGAGTGAAG TATGCGGGCC TCAACACCAC AAAGCCTGTG GTTCAACTGA
  GATGAGGTTC TCAAGTCAAA TGCAGGTGCA CGGTTGAATG GAGTGAGCTG GAGAAGCACA
  GGGTTATTAT GGAACGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38771999	mCV22932798	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss131642769	ENSMUSSNP6272832	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29425589					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6337372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	1439 bp proximal
Rr244660	regulatory region 244660	1341 bp distal
Rr246943	regulatory region 246943	1228 bp proximal
Tssr100241	transcription start site region 100241	1689 bp upstream
Tssr100242	transcription start site region 100242	1713 bp upstream
Tssr100243	transcription start site region 100243	1745 bp upstream
Tssr100244	transcription start site region 100244	1958 bp upstream
Zmiz2	zinc finger, MIZ-type containing 2	1702 bp upstream