rs29425639 SNP Detail

Summary

• ID
  rs29425639
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83301269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG GCCTGGTAGC TCCAGAGGCT
  K
  GCCAGTGCAT AGGGGGCTGT TCTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38769816	mCV23452926	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	T
ss132468883	ENSMUSSNP2380808	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29425639					SNP	G	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83301269 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3411	CpG island 3411			85 bp distal
D11Bhm144	DNA segment, Chr 11, Boehm 144			1227 bp proximal
Gm72478	predicted gene, 72478			within coordinates
Rasl10b	RAS-like, family 10, member B			Intron
				mRNA-UTR
Rr452947	regulatory region 452947			1296 bp distal
Rr452948	regulatory region 452948			361 bp distal
Rr452949	regulatory region 452949			226 bp distal
Rr452950	regulatory region 452950			within coordinates
Tssr103692	transcription start site region 103692			1154 bp downstream
Tssr103693	transcription start site region 103693			725 bp downstream
Tssr103694	transcription start site region 103694			716 bp downstream
Tssr103695	transcription start site region 103695			694 bp downstream