rs29425696 SNP Detail

Summary

• ID
  rs29425696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74723369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCCAGGG AGAGCCTTTG CCCTGGGTAG GAGGAGCTAT
  GTTCACCTAG GCTCTTGCTG GATCCTCCTG TTTTTGATCC TGTAGCGAGG GAATCCTCAG
  R
  ATCTCAGGGT GACATCTATA AGTAACATCT CACTGACCCA CTAACAGTGT CCCTAAGCCC
  TTCTGGCAAC AACCCGGCCA CATTGTTATA AGCTCGCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38768806	mCV23964392	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss132436466	ENSMUSSNP6242007	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323749912	CHEV_11_74646045	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29425696					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74723369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	59 bp distal
Cpgi3247	CpG island 3247	194 bp proximal
Gm74357	predicted gene, 74357	1728 bp upstream
Mnt	max binding protein	within coordinates
Rr450977	regulatory region 450977	1613 bp distal
Rr450978	regulatory region 450978	1546 bp distal
Rr450979	regulatory region 450979	1305 bp distal
Rr450980	regulatory region 450980	1601 bp proximal
Tssr102911	transcription start site region 102911	1640 bp downstream
Tssr102912	transcription start site region 102912	1623 bp downstream
Tssr102913	transcription start site region 102913	1538 bp downstream
Tssr102914	transcription start site region 102914	1265 bp downstream
Tssr109145	transcription start site region 109145	1854 bp upstream
Tssr109146	transcription start site region 109146	739 bp upstream
Tssr109147	transcription start site region 109147	533 bp upstream
Tssr109148	transcription start site region 109148	338 bp upstream
Tssr109149	transcription start site region 109149	308 bp upstream