rs29426050 SNP Detail

Summary

• ID
  rs29426050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70910489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGTGCGAT CCAGCCCGCC TTGGCGTTCG TTCGCAGAGG
  CAGGTCTCAG TCGATTCGGA GGAGCCGGTG TTACCGCCTT CTTCCAGCCG CTGAGTGTAG
  Y
  TTGAAGGAAG TGGCGGGAAG CCGGTGTGGG GCGGAATCCA TCACTCCCGG GATCGCTTCG
  GTAGGGGCTG TGTGCTCTCC GAGGAGGAGC GGAAAGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38764710	mCV24105042	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132379936	ENSMUSSNP4660130	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss323738906	CHEV_11_70833165	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29426050					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70910489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	within coordinates
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	116 bp upstream
Rr402697	regulatory region 402697	157 bp downstream
Rr450471	regulatory region 450471	42 bp distal
Rr450472	regulatory region 450472	within coordinates
Rr450473	regulatory region 450473	168 bp proximal
Tssr102806	transcription start site region 102806	84 bp downstream
Tssr102807	transcription start site region 102807	46 bp downstream
Tssr102808	transcription start site region 102808	25 bp downstream
Tssr102809	transcription start site region 102809	10 bp downstream
Tssr102810	transcription start site region 102810	205 bp upstream
Tssr102811	transcription start site region 102811	232 bp upstream
Tssr109052	transcription start site region 109052	1142 bp upstream
Tssr109053	transcription start site region 109053	396 bp upstream
Tssr109054	transcription start site region 109054	373 bp upstream