rs29426078 SNP Detail

Summary

• ID
  rs29426078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:67189443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC GCGGACAGTG TGGCTGAGCT
  Y
  GGGGAGCAGA TCGACAACCT GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38770414	mCV23988919	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132327427	ENSMUSSNP4025975	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29426078					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67189443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3068	CpG island 3068	within coordinates
Myh8	myosin, heavy polypeptide 8, skeletal muscle, perinatal	Coding-Synonymous
Tssr102227	transcription start site region 102227	137 bp downstream
Tssr102228	transcription start site region 102228	710 bp upstream
Tssr108547	transcription start site region 108547	866 bp upstream
Tssr108548	transcription start site region 108548	84 bp upstream
Tssr108549	transcription start site region 108549	705 bp downstream