rs29426534 SNP Detail

Summary

• ID
  rs29426534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69299250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGGTCCAG CTCCAACTGC CCTTAACAAT AGTGCCCACT
  GTTTCCAGGT GACAGTCTCT GGCCTTCTGC AACCAATTCT ACAGAGAGAA GAAAAGAGTG
  Y
  ACTGAAGTTG CCAACACAGC GAGGGCCCAA AGGCTGATCT GAACTGTCAG TGCAGGAAGA
  CTGAGGGCAA GGCGCCAGGA CAGACATCAG CATCAAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38768846	mCV22780237	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss132355569	ENSMUSSNP3307311	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss323729417	CHEV_11_69221926	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29426534					SNP	T	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69299250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	95 bp proximal
Gm72933	predicted gene, 72933	1330 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1450 bp upstream
Rr402670	regulatory region 402670	171 bp upstream
Rr402671	regulatory region 402671	935 bp upstream
Tssr3543	transcription start site region 3543	256 bp downstream
Tssr102455	transcription start site region 102455	1546 bp downstream
Tssr102456	transcription start site region 102456	487 bp upstream
Tssr102457	transcription start site region 102457	857 bp upstream
Tssr102458	transcription start site region 102458	1250 bp upstream
Tssr102459	transcription start site region 102459	1270 bp upstream
Tssr102460	transcription start site region 102460	1303 bp upstream
Tssr102461	transcription start site region 102461	1346 bp upstream
Tssr102462	transcription start site region 102462	1374 bp upstream
Tssr108661	transcription start site region 108661	1654 bp upstream
Tssr108662	transcription start site region 108662	804 bp upstream
Tssr108663	transcription start site region 108663	775 bp upstream
Tssr108664	transcription start site region 108664	593 bp upstream
Tssr108665	transcription start site region 108665	134 bp downstream
Tssr108666	transcription start site region 108666	722 bp downstream
Tssr108667	transcription start site region 108667	968 bp downstream
Tssr108668	transcription start site region 108668	989 bp downstream
Tssr108669	transcription start site region 108669	1004 bp downstream
Tssr108670	transcription start site region 108670	1123 bp downstream
Tssr108671	transcription start site region 108671	1460 bp downstream
Tssr108672	transcription start site region 108672	1944 bp downstream
Tssr108673	transcription start site region 108673	1972 bp downstream