rs29426854 SNP Detail

Summary

• ID
  rs29426854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115053012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATATCT GAGGTTACTA
  TATTTGCTTT CAAGGCAGAA ATCTTGCTCC CAGAGCAAAG TCAGCACTCT AAACTTGGGT
  TGATAAGGAA ACTCTCTGTG ACCTCTCATA GGAAGATCAG GGAGGAGCCT GGGCTCCGGG
  TTCTCTTCTG GGGCTCTGAG CTGATTGCTG GAGCTCTAGT CACATACATA GCTCTGGGCC
  Y
  CTGGCATTTC TGTTTTTCCA GAATTAAATT GCAGTATTTT GGAAAATATA CTCTGACCGG
  TTTTTCCCCC TCTGTTTATT CCCAGAAGGA GGATCGTGTT AGAGAGTTTG TTACGTGGCA
  CGTTGTGGGA AACTGTTACC CAATGTCCGA ATCATTCCAT CTTCACCCAT TGGCGTCCTC
  ATAGGTTCAA CTTACCCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38769452	mCV22627791	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss132871970	ENSMUSSNP3084408	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29426854					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115053012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	734 bp proximal
Gm72084	predicted gene, 72084	59 bp downstream
Nherf1	NHERF family PDZ scaffold protein 1	1155 bp upstream
Rab37	RAB37, member RAS oncogene family	within coordinates
Rr369433	regulatory region 369433	657 bp upstream
Rr403111	regulatory region 403111	876 bp upstream
Rr459780	regulatory region 459780	1972 bp distal
Rr459781	regulatory region 459781	1106 bp distal
Rr459782	regulatory region 459782	708 bp distal
Rr459783	regulatory region 459783	665 bp proximal
Tssr3727	transcription start site region 3727	1170 bp upstream
Tssr105840	transcription start site region 105840	1147 bp upstream
Tssr105841	transcription start site region 105841	1188 bp upstream
Tssr105842	transcription start site region 105842	1214 bp upstream
Tssr105843	transcription start site region 105843	1231 bp upstream
Tssr105844	transcription start site region 105844	1252 bp upstream
Tssr111730	transcription start site region 111730	943 bp downstream