GTACCACCAG CATGTTCGGA TATATGTGAT TCTTGGCCAA ATAACCAAGA CCAAAAAAAA AAAAAAAAAA AAAAAAAAAA GAAAGAAAGA AAAAAGGGGG R AAAAAAAGGA GGCAAGGGAG GGTTAAAAGA AAAAAAAGGT AGGGGGGCAG GGTGGGGCTG TTTCCAAACA AAAACTTGCT ATCAGAAATT AGTCTACAC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38763557 | mCV22643618 | ABI | CRAMUS_MOUSE | f | SNP | G | G | G | A | G | ||
ss132892175 | ENSMUSSNP4117147 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | G | ||||
ss323867019 | CHEV_11_116712556 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||
SNP Consensus Information | ||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs29427384 | SNP | G | G | G | A | G | G | A |
Location: Chr11:116742068 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi4197 | CpG island 4197 | 724 bp proximal | ||||||
Mettl23 | methyltransferase like 23 | 1502 bp downstream | ||||||
Mfsd11 | major facilitator superfamily domain containing 11 | 1198 bp upstream | ||||||
Rr246190 | regulatory region 246190 | 1467 bp distal | ||||||
Rr246191 | regulatory region 246191 | within coordinates | ||||||
Rr403146 | regulatory region 403146 | 1752 bp upstream | ||||||
Srsf2 | serine and arginine-rich splicing factor 2 | within coordinates | ||||||
Tssr106000 | transcription start site region 106000 | 942 bp upstream | ||||||
Tssr106001 | transcription start site region 106001 | 1243 bp upstream | ||||||
Tssr111999 | transcription start site region 111999 | 594 bp upstream | ||||||
Tssr112000 | transcription start site region 112000 | 311 bp upstream | ||||||
Tssr112001 | transcription start site region 112001 | 48 bp upstream | ||||||
Tssr112002 | transcription start site region 112002 | 16 bp downstream | ||||||
Tssr112003 | transcription start site region 112003 | 37 bp downstream | ||||||
Tssr112004 | transcription start site region 112004 | 202 bp downstream | ||||||
Tssr112005 | transcription start site region 112005 | 871 bp downstream | ||||||
Tssr112006 | transcription start site region 112006 | 916 bp downstream | ||||||
Tssr112007 | transcription start site region 112007 | 960 bp downstream | ||||||
Tssr112008 | transcription start site region 112008 | 1081 bp downstream | ||||||
Tssr112009 | transcription start site region 112009 | 1186 bp downstream | ||||||
Tssr112010 | transcription start site region 112010 | 1841 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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