rs29427384 SNP Detail

Summary

• ID
  rs29427384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116742068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACCACCAG CATGTTCGGA TATATGTGAT TCTTGGCCAA
  ATAACCAAGA CCAAAAAAAA AAAAAAAAAA AAAAAAAAAA GAAAGAAAGA AAAAAGGGGG
  R
  AAAAAAAGGA GGCAAGGGAG GGTTAAAAGA AAAAAAAGGT AGGGGGGCAG GGTGGGGCTG
  TTTCCAAACA AAAACTTGCT ATCAGAAATT AGTCTACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38763557	mCV22643618	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss132892175	ENSMUSSNP4117147	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss323867019	CHEV_11_116712556	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29427384					SNP	G	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116742068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	724 bp proximal
Mettl23	methyltransferase like 23	1502 bp downstream
Mfsd11	major facilitator superfamily domain containing 11	1198 bp upstream
Rr246190	regulatory region 246190	1467 bp distal
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	1752 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	942 bp upstream
Tssr106001	transcription start site region 106001	1243 bp upstream
Tssr111999	transcription start site region 111999	594 bp upstream
Tssr112000	transcription start site region 112000	311 bp upstream
Tssr112001	transcription start site region 112001	48 bp upstream
Tssr112002	transcription start site region 112002	16 bp downstream
Tssr112003	transcription start site region 112003	37 bp downstream
Tssr112004	transcription start site region 112004	202 bp downstream
Tssr112005	transcription start site region 112005	871 bp downstream
Tssr112006	transcription start site region 112006	916 bp downstream
Tssr112007	transcription start site region 112007	960 bp downstream
Tssr112008	transcription start site region 112008	1081 bp downstream
Tssr112009	transcription start site region 112009	1186 bp downstream
Tssr112010	transcription start site region 112010	1841 bp downstream