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rs29427384 SNP Detail
Summary
  • ID
    rs29427384
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:116742068 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GTACCACCAG CATGTTCGGA TATATGTGAT TCTTGGCCAA
    ATAACCAAGA CCAAAAAAAA AAAAAAAAAA AAAAAAAAAA GAAAGAAAGA AAAAAGGGGG
    R
    AAAAAAAGGA GGCAAGGGAG GGTTAAAAGA AAAAAAAGGT AGGGGGGCAG GGTGGGGCTG
    TTTCCAAACA AAAACTTGCT ATCAGAAATT AGTCTACAC                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss38763557 mCV22643618 ABI CRAMUS_MOUSE f SNP G G G A G
ss132892175 ENSMUSSNP4117147 ENSEMBL ENSEMBL_Sanger f SNP G G G
ss323867019 CHEV_11_116712556 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs29427384 SNP G G G A G G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:116742068 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4197 CpG island 4197 724 bp proximal
Mettl23 methyltransferase like 23 1502 bp downstream
Mfsd11 major facilitator superfamily domain containing 11 1198 bp upstream
Rr246190 regulatory region 246190 1467 bp distal
Rr246191 regulatory region 246191 within coordinates
Rr403146 regulatory region 403146 1752 bp upstream
Srsf2 serine and arginine-rich splicing factor 2 within coordinates
Tssr106000 transcription start site region 106000 942 bp upstream
Tssr106001 transcription start site region 106001 1243 bp upstream
Tssr111999 transcription start site region 111999 594 bp upstream
Tssr112000 transcription start site region 112000 311 bp upstream
Tssr112001 transcription start site region 112001 48 bp upstream
Tssr112002 transcription start site region 112002 16 bp downstream
Tssr112003 transcription start site region 112003 37 bp downstream
Tssr112004 transcription start site region 112004 202 bp downstream
Tssr112005 transcription start site region 112005 871 bp downstream
Tssr112006 transcription start site region 112006 916 bp downstream
Tssr112007 transcription start site region 112007 960 bp downstream
Tssr112008 transcription start site region 112008 1081 bp downstream
Tssr112009 transcription start site region 112009 1186 bp downstream
Tssr112010 transcription start site region 112010 1841 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory