rs29427434 SNP Detail

Summary

• ID
  rs29427434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83328948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCAACCAGCC CACCACCATG GTGATGCTAG AAAAATTAAA CTTTTCCCAG TCTCCCATCT
  GTGCTTCTAC AATCCTCAGC TTTCTCCTCC CTAAATATTC TTGTCTTCCT CCATCAGTTC
  TCCTATCTTT GCTTGTTCGG ACCTCTCTCT GTCTCCTCTG GCCTGCATGC TAAGGATCTT
  TTTCAGAGGG GGGTGGGCAA GACAGGCATG GTAGTACTCA GGAGCAGAGG CAGGTGGATC
  TCTGTGAGTT TGAGGCTAGC CTGGTCTACA TAATGAGTTT ACAGGACAGC CAGAGCTACA
  R
  AAAAAAAAAA AAAAACCCAA ACAATTAAGA AAATTCCACT CCCAAAAACA AAAATAAAAA
  CAAAACAAAA CAAAACAAAA TTAGAGTGGA GGGGGTTTAG ATAGGACTCA GATTGTAGCC
  CAGGCTGGCC TGGAATCTAT TACATAGCAC AGGATGCTAG CCTGAGCTCT CAGCAATCCT
  CCTGCTGCAG CCTTTCTTGT GCTGAGTCCA TTAGCATGAG CCACCACCTA TTTGTGCAAT
  GATTGTTTGT TTGTTTTTGT TTTTTGAGAC AGGGTTTTTC TGTGTAGCTC TGGCTGTCCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38770484	mCV23038065	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29427434					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83328948 () rs orientation: forward

Symbol	Name	Function Class
1700020L24Rik	RIKEN cDNA 1700020L24 gene	within coordinates
Cpgi3414	CpG island 3414	1963 bp proximal
Tssr3609	transcription start site region 3609	395 bp downstream
Tssr103697	transcription start site region 103697	471 bp downstream
Tssr103698	transcription start site region 103698	451 bp downstream
Tssr103699	transcription start site region 103699	414 bp downstream
Tssr103700	transcription start site region 103700	404 bp downstream
Tssr103701	transcription start site region 103701	1831 bp upstream