rs29427911 SNP Detail

Summary

• ID
  rs29427911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118308762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT GTCTCTAGCC AAGCAAAGAC
  R
  CTCTGGGCTC TATGTGACAG AGATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38771915	mCV24191021	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132901463	ENSMUSSNP2926974	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss323870307	CHEV_11_118279250	CHEVERUD	SCREENING_POP	f	SNP					A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29427911					SNP	A	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118308762 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	625 bp proximal
Gm72450	predicted gene, 72450	1151 bp upstream
Rr403174	regulatory region 403174	939 bp upstream
Rr461044	regulatory region 461044	1652 bp distal
Rr461045	regulatory region 461045	within coordinates
Rr461046	regulatory region 461046	1077 bp proximal
Rr461047	regulatory region 461047	1162 bp proximal
Tssr106139	transcription start site region 106139	1287 bp upstream
Tssr112169	transcription start site region 112169	1020 bp downstream
Tssr112170	transcription start site region 112170	1082 bp downstream
Tssr112171	transcription start site region 112171	1180 bp downstream