rs29428205 SNP Detail

Summary

• ID
  rs29428205
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20780615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCG GGAAGCAAAG CCCGTGTAGG
  W
  GGGCGGCAGG CCCCTCTCCA AGCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38772149	mCV23238068	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss131781710	ENSMUSSNP358833	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29428205					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20780615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	within coordinates
Gm12037	predicted gene 12037	740 bp downstream
Lgalsl	galectin like	within coordinates
Rr443483	regulatory region 443483	431 bp proximal
Rr443484	regulatory region 443484	782 bp proximal
Rr443485	regulatory region 443485	1317 bp proximal
Tssr3438	transcription start site region 3438	163 bp downstream
Tssr107046	transcription start site region 107046	394 bp downstream
Tssr107047	transcription start site region 107047	445 bp downstream
Tssr107048	transcription start site region 107048	558 bp downstream
Tssr107049	transcription start site region 107049	589 bp downstream
Tssr107050	transcription start site region 107050	608 bp downstream
Tssr107051	transcription start site region 107051	695 bp downstream