rs29428508 SNP Detail

Summary

• ID
  rs29428508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121280212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGGTGAC CGCTGCCTCC
  CTGCAGGAAC ACTATCCTTT CAAAGAGTTG ACTATAATAA GCTCTAATTA CAAGATATGG
  CTGCCAGTCT AGAATAGGTA ATTGAGATAG GGTTTTTCGA GACAGGGTTT CCCTGAGTAG
  CCCTTTCTGT CCTGAAACTG GCTTTGTAGA TCAGGCTGGT CTTGAGATCT GCCTGCCTCT
  R
  CCTCCTGAGT GTGGTATTAA AGACATCGGC CACCACTACC CAGCTAGAAT GGATGGTCTC
  GCTGAGCCAT TTTTGACTCA GAATACTATC TTTGACTCAA GATTACACTG TTGCTAACCA
  AGAATACCTG AGCTGTAATT ATTTCAGAGG ACCATGACAT GGCAACAATC GCCCACACAG
  AAAAACCTTC CTTAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38774587	mCV24693023	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss132911612	ENSMUSSNP6030129	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29428508					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121280212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	864 bp distal
Rab40b	Rab40B, member RAS oncogene family	1135 bp upstream
Rr461969	regulatory region 461969	1399 bp distal
Rr461970	regulatory region 461970	1137 bp distal
Rr461971	regulatory region 461971	645 bp distal
Tssr112458	transcription start site region 112458	1119 bp upstream