rs29428701 SNP Detail

Summary

• ID
  rs29428701
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68917896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTGTCTTGT CTTGTCTTGT CTTGTCTTGT CTTGTTCCAG ACAGGGATTT TCCAAAGTTT
  AGTTGTTGTG AGCCACCCAT AGTGGGTACT AGAACTGAAC TTGAGTCCTA TTCAAGAGTA
  ATACTTTTCT TTTAACTGCT GAGCCATCTC TCCAGCCTTT AGGTAGTTTT TTGTCTTGTT
  TGTTTTGAGA CAGGGTCTCA CTTGGAAGCC TTGGCCAATC TGAGACTTGC TATGTAAACT
  AAGTTGGTCT AAACCTCAAA TCCCCTTCCT CTGATCTGGA GTGCTGCAGT TACAAGCATG
  K
  TTTTTTTTTT TTGTTTTTGT TTTTTTTGTT TTAGATCACA GTAGCTCAAA CTGGCCTCAA
  GCCTCTGTGT AGCCAAAAAT GGCCCTTTAT CTTCGAGTCT TCCTGCCTCT GCCTGCCAAG
  GGCTGGGATT TACAGGCATG TGCTACGTAC TCAGCTTACC TCTGCTTTTC TGTTTTCCTG
  CAGCTCCGAG ATGTTCATCT CCTCCAGGCA GTGGGTGGAG CAACAACAAA ACCTGTCCTG
  GCGCTCTGTC TCCATGGCAC TGTTCGGCTT CAAGGCTTTT CTTGTCTTAA GCCTCTGACT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38774001	mCV23351044	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss132347469	ENSMUSSNP2921023	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29428701					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68917896 () rs orientation: forward

Symbol	Name	Function Class
Ctc1	CTS telomere maintenance complex component 1	within coordinates
Gm74108	predicted gene, 74108	within coordinates
Rr235731	regulatory region 235731	1705 bp proximal
Rr251243	regulatory region 251243	within coordinates
Rr253641	regulatory region 253641	1680 bp proximal
Rr386226	regulatory region 386226	within coordinates
Tssr102357	transcription start site region 102357	1015 bp downstream
Tssr102358	transcription start site region 102358	985 bp downstream
Tssr102359	transcription start site region 102359	236 bp downstream
Tssr102360	transcription start site region 102360	18 bp upstream
Tssr102361	transcription start site region 102361	224 bp upstream
Tssr102362	transcription start site region 102362	270 bp upstream
Tssr102363	transcription start site region 102363	905 bp upstream