rs29428737 SNP Detail

Summary

• ID
  rs29428737
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGGAAGA AGATGAGGCG CTGGAAGGTC CCCCACTCGC
  CCAGGAAGGC GGTCACCTCG TCGTAGTCAA GCATAGAGTC GGCAGCCCAC GGCGTCCCGC
  S
  GGGAATCCGA GGATACTCGG GCGCAGTGGG CGGCGCACGG TTTGTCCGTG CACGCGGAGC
  ACCAGTCACT CGTCGAAGAG GAGTTCGAGA AAGCGTCGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38773205	mCV24821421	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss132135377	ENSMUSSNP4958241	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29428737					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	within coordinates
Gm30927	predicted gene, 30927	147 bp upstream
Rr447213	regulatory region 447213	within coordinates
Rr447214	regulatory region 447214	36 bp proximal
Rr447215	regulatory region 447215	438 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	141 bp upstream
Tssr101465	transcription start site region 101465	160 bp upstream
Tssr107965	transcription start site region 107965	3 bp downstream
Tssr107966	transcription start site region 107966	65 bp downstream
Tssr107967	transcription start site region 107967	387 bp downstream
Tssr107968	transcription start site region 107968	412 bp downstream
Tssr107969	transcription start site region 107969	470 bp downstream