rs29428830 SNP Detail

Summary

• ID
  rs29428830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104497107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA AATTACTGTT TTGTGTGTAT
  R
  TGTATATAAG TGTGTGATAT GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38772627	mCV24560331	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss132755740	ENSMUSSNP5182146	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29428830					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104497107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3994	CpG island 3994	1505 bp proximal
Itgb3	integrin beta 3	1719 bp upstream
Rr403025	regulatory region 403025	1598 bp upstream
Rr457855	regulatory region 457855	1229 bp proximal
Tssr105409	transcription start site region 105409	1495 bp upstream
Tssr105410	transcription start site region 105410	1719 bp upstream
Tssr105411	transcription start site region 105411	1745 bp upstream
Tssr105412	transcription start site region 105412	1759 bp upstream