rs29429223 SNP Detail

Summary

• ID
  rs29429223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28533018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGTCTTCT CCCTTGGTGT ACTGTAACCT AATTCCTGAA
  GCGTCTTTGT TCCTTGGGAC TTTAAATATC CCCTGTGCTC ACCGTGCCCT TCTCTGACTT
  Y
  TGACATCCTT GGTTCCTAAT CCCTTAGTCT CAGAAGCATC AAAGAAAGCC AGATGCCAAG
  TCCCCGTAAG AAGAAAAGAA AGGGCCTCCA AAGTTTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss38778613	mCV23805379	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss131877074	ENSMUSSNP3129863	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29429223					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28533018 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	within coordinates
Cpgi2667	CpG island 2667	129 bp proximal
Rr233134	regulatory region 233134	1383 bp proximal
Rr246448	regulatory region 246448	within coordinates
Rr385862	regulatory region 385862	within coordinates
Tssr107205	transcription start site region 107205	1056 bp downstream
Tssr107206	transcription start site region 107206	1201 bp downstream
Tssr107207	transcription start site region 107207	1242 bp downstream