rs29429420 SNP Detail

Summary

• ID
  rs29429420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCAGTGGCC TCTGAATTTC CTTCCTGGGA CGTGGGGAGG TGGGGATCCA GGGACAGGGC
  TCTGGGATGG GGGACTTGCC TTCTACCCCT GCCCTTTCTC TCTCCCTCAC TTCTCATCCA
  GATATTGCCA CCTTCCTCTC TTGCCTGTCT TATGCCTTAG ACCTTTTTTC TTGCCTCTTT
  TACCTTTTCC TCTTTCCAGT CTTCCTTGTG CATCCCCAGA TCCCCAGCTT CACCAGTTCA
  ATCATCCCAG GTGCACAGCA TTGCGGACAT GCTCGCACGT ACTTCATTCC CAGATCTCTC
  Y
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CACACACACA CACACACACA CACACACACA
  TACACACACA CACACCTCAG GCCCGCCATC CCAACAATAC ATCACATCTC CATGCTGCAG
  ACCTGAGGCC TGGGAGGTGT TGCCCATGGA TCCTGGGAGG TTCATGAGCC CTCAAAGGGA
  TTCAAGCAGC AGAAACAGGG ACTGAGACAT GGAGGACCAG GTTGCTCCTT GGTCACACAT
  GGAGGGGTAG CTGGCCTCTC CCCACCTCTA GCCCAAAGAA ACCATAATTT AGTATAGAAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38775285	mCV22890668	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29429420					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844175 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	307 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	within coordinates
Gm74287	predicted gene, 74287	902 bp downstream
Tssr3647	transcription start site region 3647	1365 bp downstream
Tssr104283	transcription start site region 104283	1872 bp downstream
Tssr104284	transcription start site region 104284	1812 bp downstream
Tssr104285	transcription start site region 104285	1782 bp downstream
Tssr104286	transcription start site region 104286	1749 bp downstream
Tssr104287	transcription start site region 104287	1725 bp downstream
Tssr104288	transcription start site region 104288	1685 bp downstream
Tssr104289	transcription start site region 104289	1677 bp downstream
Tssr104290	transcription start site region 104290	1629 bp downstream
Tssr104291	transcription start site region 104291	1614 bp downstream
Tssr104292	transcription start site region 104292	1517 bp downstream
Tssr104293	transcription start site region 104293	1410 bp downstream
Tssr104294	transcription start site region 104294	1376 bp downstream
Tssr104295	transcription start site region 104295	1332 bp downstream
Tssr104296	transcription start site region 104296	1308 bp downstream
Tssr104297	transcription start site region 104297	1285 bp downstream
Tssr104298	transcription start site region 104298	1251 bp downstream
Tssr104299	transcription start site region 104299	1217 bp downstream
Tssr104300	transcription start site region 104300	1197 bp downstream
Tssr104301	transcription start site region 104301	1077 bp downstream
Tssr104302	transcription start site region 104302	1063 bp downstream
Tssr104303	transcription start site region 104303	1044 bp downstream
Tssr104304	transcription start site region 104304	1002 bp downstream
Tssr104305	transcription start site region 104305	980 bp downstream
Tssr104306	transcription start site region 104306	965 bp downstream
Tssr104307	transcription start site region 104307	948 bp downstream
Tssr104308	transcription start site region 104308	875 bp downstream
Tssr104309	transcription start site region 104309	851 bp downstream
Tssr104310	transcription start site region 104310	765 bp downstream
Tssr104311	transcription start site region 104311	716 bp downstream
Tssr104312	transcription start site region 104312	647 bp downstream
Tssr104313	transcription start site region 104313	631 bp downstream
Tssr104314	transcription start site region 104314	226 bp downstream
Tssr110225	transcription start site region 110225	1812 bp upstream
Tssr110226	transcription start site region 110226	1772 bp upstream
Tssr110227	transcription start site region 110227	1759 bp upstream
Tssr110228	transcription start site region 110228	1699 bp upstream
Tssr110229	transcription start site region 110229	1679 bp upstream
Tssr110230	transcription start site region 110230	1642 bp upstream