rs29429597 SNP Detail

Summary

• ID
  rs29429597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT CAAAAGCATT TTCAAATCTG
  K
  TCTCCTAAAC TGAAGTCCCA GCCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38776415	mCV23357616	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss132359116	ENSMUSSNP1896350	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29429597					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490128 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	434 bp downstream
Gm72066	predicted gene, 72066	427 bp upstream
Rr386229	regulatory region 386229	105 bp upstream
Rr450033	regulatory region 450033	246 bp proximal
Rr450034	regulatory region 450034	287 bp proximal
Rr450035	regulatory region 450035	739 bp proximal
Tssr3544	transcription start site region 3544	1393 bp downstream
Tssr102487	transcription start site region 102487	711 bp upstream
Tssr102488	transcription start site region 102488	1861 bp upstream
Tssr102489	transcription start site region 102489	1936 bp upstream
Tssr108712	transcription start site region 108712	705 bp downstream
Tssr108713	transcription start site region 108713	850 bp downstream
Tssr108714	transcription start site region 108714	932 bp downstream
Tssr108715	transcription start site region 108715	945 bp downstream
Tssr108716	transcription start site region 108716	1257 bp downstream
Tssr108717	transcription start site region 108717	1282 bp downstream
Tssr108718	transcription start site region 108718	1341 bp downstream
Tssr108719	transcription start site region 108719	1352 bp downstream
Tssr108720	transcription start site region 108720	1356 bp downstream
Tssr108721	transcription start site region 108721	1370 bp downstream
Tssr108722	transcription start site region 108722	1451 bp downstream
Tssr108723	transcription start site region 108723	1479 bp downstream
Tssr108724	transcription start site region 108724	1532 bp downstream
Tssr108725	transcription start site region 108725	1556 bp downstream
Tssr108726	transcription start site region 108726	1651 bp downstream
Tssr108727	transcription start site region 108727	1673 bp downstream
Tssr108728	transcription start site region 108728	1717 bp downstream
Tssr108729	transcription start site region 108729	1804 bp downstream
Tssr108730	transcription start site region 108730	1836 bp downstream
Tssr108731	transcription start site region 108731	1867 bp downstream
Tssr108732	transcription start site region 108732	1928 bp downstream