rs29429616 SNP Detail

Summary

• ID
  rs29429616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53190106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAGCTTCTT CCAAAGTTTA CCTAAAGGAA TTCAGTAGAT TAACATCTTT TTTAAGACAA
  AGCTTTCTTT TCTGCGTAGC CCTGCCTATC CTGAAATGGT CTCTATGAAC CAGGCTGGCC
  TCGAACTCAC TGCAGCCTGC CTCTGCCTCC CTGCGAGAGC TGGGATTAAA GGCCTGTGCC
  ACCAGCGCCA GATAAATAAA ATTTTAACGC ACCTGTAATA CCAGATTCTA GCAGACAGAA
  GCAGAATGAA AATTTTAGGT CATCCTGGGC TAAATGTGGG GGAAAAAATC CTACATATAT
  Y
  TAAAAAGTAG ACTCCCTTTT ACTCCAGCAA GCTCTGAGTG AGTCTTTTTT TTTTTTTTTT
  TTTTTTTTGC AGATTTGTCT ATACTGGTCC CATAACTTCA TGTAAGTTCT AGAAGTCAAA
  CAGAGCCCTT GAGTCATGCA TTAACAATTG TGGCAACCTT CCGGCTGGAA TTCATTAGCA
  TGAAAAACTA ACGCTGTTAA GGAATAGGTG AGCAGCCTGG GTAAGGAATG ACCCAACCTA
  ACTCAATATC CAAAAACGAA TGAAGGGAGT TAAAACGCTA TCAAGAAAAG CATGGACTTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38775566	mCV27570889	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29429616					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53190106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	314 bp proximal
Hspa4	heat shock protein 4	within coordinates
Rr369205	regulatory region 369205	1134 bp upstream
Rr446993	regulatory region 446993	69 bp proximal
Rr446994	regulatory region 446994	1168 bp proximal
Tssr101379	transcription start site region 101379	576 bp upstream
Tssr101380	transcription start site region 101380	605 bp upstream
Tssr101381	transcription start site region 101381	1527 bp upstream
Tssr107908	transcription start site region 107908	898 bp downstream
Tssr107909	transcription start site region 107909	908 bp downstream
Tssr107910	transcription start site region 107910	920 bp downstream
Tssr107911	transcription start site region 107911	1053 bp downstream
Tssr107912	transcription start site region 107912	1094 bp downstream
Tssr107913	transcription start site region 107913	1251 bp downstream
Tssr107914	transcription start site region 107914	1407 bp downstream