rs29430308 SNP Detail

Summary

• ID
  rs29430308
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42312042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTTTTCCTT TTTCCCCTTT AATTTTTTTA AACAAGGAAA TCTCGGTCCC
  M
  GGCAGCCGCC GCTGCCCCTT TGATGTTTTG GTACGCCGTG CGCATGCGCT           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38776467	mCV23022179	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29430308					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42312042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	712 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	10 bp upstream
Rr445405	regulatory region 445405	1448 bp distal
Rr445406	regulatory region 445406	within coordinates
Tssr100974	transcription start site region 100974	1496 bp downstream
Tssr100975	transcription start site region 100975	1430 bp downstream
Tssr100976	transcription start site region 100976	1260 bp downstream
Tssr100977	transcription start site region 100977	772 bp downstream
Tssr100978	transcription start site region 100978	436 bp downstream
Tssr100979	transcription start site region 100979	360 bp downstream
Tssr100980	transcription start site region 100980	18 bp upstream
Tssr100981	transcription start site region 100981	43 bp upstream
Tssr100982	transcription start site region 100982	70 bp upstream
Tssr100983	transcription start site region 100983	107 bp upstream