rs29430402 SNP Detail

Summary

• ID
  rs29430402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72853936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGACAGAG CAGGCAGAAA ACACTGGCAG GGGTGTTTCA
  GGTGCCTCTG CATTGATGCT GTTACTAGTA AAAGCTCTGA CTTCATTGAG TAACTGCTTC
  R
  TGTCAGAAGC AGCTCTCAGA ACTTCTCATC AATTAGCTCA TTTCTTCTTC CAAACAGCTC
  TGAAGTAAGG ACTTTGTCTC CCCGTCTCAC CAAGGAGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38774861	mCV22672664	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29430402					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72853936 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	within coordinates
Cpgi3227	CpG island 3227	1208 bp distal
Rr402707	regulatory region 402707	578 bp upstream
Rr450780	regulatory region 450780	1931 bp distal
Rr450781	regulatory region 450781	629 bp distal
Rr450782	regulatory region 450782	within coordinates
Tssr102862	transcription start site region 102862	1931 bp downstream
Tssr102863	transcription start site region 102863	1882 bp downstream