rs29430606 SNP Detail

Summary

• ID
  rs29430606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29476251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTACCGTG ATTCCATACA
  ACAGATAAAG TCGAGGCACA GAGTTGACAA CACACCTCTA AGTTCACACT GTGAACGGGC
  TGGGCCAGCA GCCGGAGAAC CCTAGCTCCA CTACCTACCC TGCCCACCCC GTTAGAGCTT
  TCTAGGGCCA CCTTGCGCCG CTTCCTTCCA GCTAGATACA CGCAAGTTTG AAGTACGTGT
  Y
  CTTCCTGGAG AAGGGAGGGA ACTGCAGAGC ACCCGGTCCC CACTGCAGGC CAGCAGCCGA
  AGCTGCAGGT TACAGGACCA GCCATAGCCG GCCTCCACCA GCCACAGACA ACCCAGAATT
  CCATGGGGAA GCTGCTTCCG GCGGTACCGG AAGCACGACG GGGACCTCAC GGAAGGGACG
  GACTGAATGA CCCACAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38776929	mCV25279105	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss131895994	ENSMUSSNP6151959	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C		C
ss323610911	CHEV_11_29426251	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29430606					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29476251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	within coordinates
Gm57396	predicted gene, 57396	within coordinates
Mtif2	mitochondrial translational initiation factor 2	157 bp upstream
Rr369145	regulatory region 369145	43 bp upstream
Rr444173	regulatory region 444173	within coordinates
Rr444174	regulatory region 444174	123 bp proximal
Rr444175	regulatory region 444175	217 bp proximal
Tssr100719	transcription start site region 100719	156 bp upstream
Tssr100720	transcription start site region 100720	172 bp upstream
Tssr107213	transcription start site region 107213	92 bp downstream