rs29430740 SNP Detail

Summary

• ID
  rs29430740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104220947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGATCGCTAG CCTCCCAGAG CTCAGCTGCC ATTAAGTCCC CATGCACGTA ATCAGTCTCC
  ACACCCCAGT TTGGGGAACA TACCCCCTTG ATTGAAGTGT TTTTTTCCTC CGGTCCCATG
  GAAACCATGC TGCCTGCCCT GCTGGAGCAG ACGGCCACCT CCATAGATGC AGCCCTTTCT
  TTCCCATCTT CGCCCTGTTA CGTTGTAGTT GGATTTGTCT GTTTGTCTGG GTTCACCAGA
  GTGACTATGA TAGTGAAAAG AAAAGAAAGA AAAAGAAAAA AAAAAAGAAA AAGAAAAAAG
  R
  AAAAAAAAAA GGACGCATGT ATCTTGAAAT ATTTGTCAAA AGGTTCTAGC CCACCACGTG
  ATGGAGAGTC TGGATATCTC CTTCCTGACG TGGCTCCAGG CCAGTGCAGT GCTAACCTGC
  TGGGACATCC CATGTTTTGA AGGGTTTCTT CTGCATCTGG GACCTCACAG ACACTGGATT
  GTGACATTGG AGGTCTGTGA CATTGGAGGT CAATGGCATT GGCCAAGGCC TGAAGCACAG
  GACCAGCTAG AGGCAGCAGG CTCCGAGTGC CAGGGAGAGC TTGTGGCTGG CCTGTTTTGT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38778489	mCV24645875	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss132753687	ENSMUSSNP6265239	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29430740					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104220947 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Tssr3697	transcription start site region 3697	193 bp downstream
Tssr105389	transcription start site region 105389	1523 bp downstream
Tssr105390	transcription start site region 105390	337 bp downstream
Tssr105391	transcription start site region 105391	152 bp downstream
Tssr111229	transcription start site region 111229	1879 bp upstream