rs29431071 SNP Detail

Summary

• ID
  rs29431071
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29452397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGACAGGG TTTCTCTGTA TAGCCCTGGC TGTCCTGGAA
  CTCACTCTGT AGACCAGGCT GGCCTCAAAC TCAGAAATCC GCCTGCCTCT GCCTCCCAGT
  S
  CTGGGATTAA AGTCGTGCGC CACCACTGCC CAGGGATCTA TTATTCTTTA TGATTGAATA
  ATTTTTTTGT CTTGAACTCT ATCTACAGCT TATTATTCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38781880	mCV25280117	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss131895749	ENSMUSSNP433149	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss323610821	CHEV_11_29402397	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29431071					SNP	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29452397 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	1404 bp proximal
Tssr100714	transcription start site region 100714	1580 bp upstream