rs29431137 SNP Detail

Summary

• ID
  rs29431137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94967505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGG CTAGGTGGAG GATTTAGAAC
  R
  GCAAGCCCTC GATCACCAGG AGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38779907	mCV24742027	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss132653040	ENSMUSSNP504674	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29431137					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94967505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	within coordinates
Rr454943	regulatory region 454943	1742 bp distal
Rr454944	regulatory region 454944	1023 bp distal
Rr454945	regulatory region 454945	241 bp distal
Rr454946	regulatory region 454946	505 bp distal
Rr454947	regulatory region 454947	239 bp distal
Rr454948	regulatory region 454948	within coordinates
Rr454949	regulatory region 454949	25 bp proximal
Rr454950	regulatory region 454950	293 bp proximal
Rr454951	regulatory region 454951	957 bp proximal
Rr454952	regulatory region 454952	1461 bp proximal
Tssr3652	transcription start site region 3652	63 bp upstream
Tssr104346	transcription start site region 104346	266 bp upstream
Tssr110254	transcription start site region 110254	90 bp upstream
Tssr110255	transcription start site region 110255	24 bp upstream
Tssr110256	transcription start site region 110256	within coordinates
Tssr110257	transcription start site region 110257	124 bp downstream