rs29431307 SNP Detail

Summary

• ID
  rs29431307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75481972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGGGAATC TTCGCTTTGC CTCTTGCTTA TTTATTTTTT
  TATTTTATTT CTTTATTTTG ACCCAGGGTC TCTCTGTGTA ACCCTGGCTG ACCTGGAACT
  Y
  ACTTTGTAGA CCAGATTGGC CTTAGATCTG CCTGCCTCTG CCTCCTGAGT TCTGGGATTA
  AAGGTGTGCC CCCACTGCCT GTCTCCACTT TTTGTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38772349	mCV22728600	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss132438721	ENSMUSSNP4974140	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
ss323751094	CHEV_11_75404648	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29431307					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75481972 () rs orientation: forward

Symbol	Name	Function Class
4931413K12Rik	RIKEN cDNA 4931413K12 gene	within coordinates
Gm53686	predicted gene, 53686	741 bp downstream
Pitpna	phosphatidylinositol transfer protein, alpha	within coordinates
Rr451216	regulatory region 451216	1857 bp distal
Rr451217	regulatory region 451217	1427 bp proximal