rs29431416 SNP Detail

Summary

• ID
  rs29431416
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93775983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACGGTC ACCCCTGTGG
  TTCCAGCAGA GGGTGTAAGA GCCCGAAGAT GAGCGACTCT ACTTTGCAGA CATCCTTTGG
  CAAACCAAGC CGACAGTTGA GCGCCTGCTG GATGCGAAGC GCCGCAGCCC CTTTGGGGCG
  GAGAAAGGCA GCGTCCCCGC CCTCGCCAGC CAGCAGCCCA GAACCCGAGG CGAAAGAGCC
  S
  GACGGCGCCC CTCGGCGCCC GCGGTCGCCG GTCCCTCCCA CCTGAGCACT CGCCGCCACA
  GGTCCCCCCC ACCTCCAGGC TCCGCCCCCG GGGCCTCGCC TCCCGCCGCG CGCCCCGCCA
  GAGCGTGTGC CCGCTCGGCA GGCAGGCAGG CGGGCAGGCA GGCAGGCCTT CCTCACCCGC
  GAGCTCCGCA GCCGCTGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38781890	mCV22887081	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss323810022	CHEV_11_93746471	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29431416					SNP	G	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93775983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	within coordinates
Gm72169	predicted gene, 72169	523 bp downstream
Mbtd1	mbt domain containing 1	695 bp upstream
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	527 bp upstream
Tssr3641	transcription start site region 3641	667 bp upstream
Tssr104149	transcription start site region 104149	16 bp downstream
Tssr104150	transcription start site region 104150	114 bp upstream
Tssr104151	transcription start site region 104151	727 bp upstream
Tssr104152	transcription start site region 104152	980 bp upstream
Tssr104153	transcription start site region 104153	1000 bp upstream
Tssr104154	transcription start site region 104154	1072 bp upstream
Tssr104155	transcription start site region 104155	1088 bp upstream
Tssr110106	transcription start site region 110106	892 bp upstream
Tssr110107	transcription start site region 110107	503 bp downstream
Tssr110108	transcription start site region 110108	567 bp downstream
Tssr110109	transcription start site region 110109	595 bp downstream
Tssr110110	transcription start site region 110110	934 bp downstream
Tssr110111	transcription start site region 110111	1345 bp downstream
Utp18	UTP18 small subunit processome component	within coordinates