rs29431507 SNP Detail

Summary

• ID
  rs29431507
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74597711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCTGTTCT GGGTTCTTCT AACATTTTCA CGAGACACTA
  AGACAAACTC AACTAGAATG GTCTATAATT ATGATCTTTA AAAAAAAATT AAACCCAAAT
  W
  GATTATTGTT GGTGAATGTG TTAGCCCAGC ATCCAAGAGG TAGAAAGCAG AGTCATCCTT
  AGCTACAGAG CAAGTGTGAG GCCAGCCTGG GATATAGAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38773931	mCV24136877	ABI	CRAMUS_MOUSE	f	SNP			A	T
ss132435337	ENSMUSSNP1262056	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
ss323749425	CHEV_11_74520387	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29431507					SNP	T	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74597711 () rs orientation: forward

Symbol	Name	Function Class
D11Mit352	DNA Segment, Chr 11 Massachusetts Institute of Technology 352	350 bp proximal
Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	within coordinates
Rr386282	regulatory region 386282	within coordinates
Tssr109134	transcription start site region 109134	1255 bp upstream