rs29431565 SNP Detail

Summary

• ID
  rs29431565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70415521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGCCCTG TGATCCATCC
  AATAGCTGAC TGTGAGCATC CACTTCTGTG TTTGCCAGGC CCCGGCATAG TTTCACAAGA
  GACAGCCATA TCTGGGTCCT TTTAGCAAAA TCTTGCTAGT GTATGCAATG GTGTCAGCGT
  TTGGAAGCGG ATTATGGGAT GGATCCCCGG ATATGGCAGT TTCTAGATGG TCCATCTTTT
  Y
  GTCTCAGCTC GAATGGCACG ATTTAAAATG TATTAAAAAT ATAATACATA GGTGAGAATG
  TGTAACGGTG GAAACCCTCA GATATGGCAG GGGTGATTGT CAAGGGGTAT AGATGCTCCC
  AAAAAACAAT TGTAGCTTCT TCAAAAGTTC TTGTGGGACC CGGGAAGTAG GTACCCCGGA
  CTATTGAAAA CACGACCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38780140	mCV24082124	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132372292	ENSMUSSNP3772085	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29431565					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70415521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	558 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	672 bp upstream
Rr369269	regulatory region 369269	369 bp upstream
Rr450320	regulatory region 450320	1144 bp distal
Rr450321	regulatory region 450321	1105 bp distal
Rr450322	regulatory region 450322	201 bp proximal
Tssr102728	transcription start site region 102728	666 bp upstream
Tssr102729	transcription start site region 102729	1214 bp upstream
Tssr102730	transcription start site region 102730	1259 bp upstream
Tssr102731	transcription start site region 102731	1286 bp upstream