rs29432514 SNP Detail

Summary

• ID
  rs29432514
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96182032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCACTCG GCAAACATTT
  TTCATCAGAT GCCTTGCTTT TATTTCAATT TATTTTTACT TTATGTATTT AAATCTATTT
  CATTCTAAAT TGGCATGGGC GATCCACATG AAATTTTTAA ATTGAAGGGA AACCAGTCCC
  GGCGAGCGAC AGTGAGTTTA CCGGGCTGGG GTGCGTCCGC AGTGAGCCTG GCAGCACCGG
  M
  CGCCAGGGCT TCCTCTGGGC CGTTCGGCCT GCTCCTGAGT ACGGCCAACC TGGAACCTTC
  TGAGGGGCAC ACACACACAC AGGAGGGGGA GGGAGAGAAA AATATGTTTT TTTTAAAGGG
  GATTATTTCG TTTTCTGCGT TTGGTTACCA GAAACTCAAC CTAAAATGTA GTTTTTGTTT
  TTTTAAAGAA AGCCTAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38779783	mCV27575627	ABI	CRAMUS_MOUSE	f	SNP		C	A
ss132676626	ENSMUSSNP882248	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29432514					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96182032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3638	CpG island 3638	1584 bp distal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	1615 bp upstream
Hoxb7	homeobox B7	1044 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	780 bp proximal
Rr455357	regulatory region 455357	1281 bp proximal
Tssr104478	transcription start site region 104478	947 bp upstream
Tssr104479	transcription start site region 104479	1247 bp upstream
Tssr110325	transcription start site region 110325	1678 bp upstream