rs29432587 SNP Detail

Summary

• ID
  rs29432587
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70058278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAGCTCGGG TCCAGGTCCT CCCCTGGCTC CTGAGTGTAG GTGTAAATCC CAGGAAGGGC
  GCAGCCTCAA GACCTGACCC ATAGCAGACC TAACAATAGC AATAAGTTCA GCTTTTGATA
  TTACCTCCAA ATTATAAACT CAACTGAACT GTACTACGTC CAATCCTGGC CCCATTTCTA
  ATTCAATTGT AAGCTAGCTC CCTTCAAAAA AAGTTTTTAA TTTGCTTTTT TCATTTCCTC
  TGTCTTCCTT CCTTCTTTTT CCCTTTCCTC CTTCCTTCCT TTCTCTCCCC CCCCCCCCCC
  M
  CAAAAAAAAG CTGAGGACTG AACCCAGGTC CTTGTCCTTG TAGGCAGTGC TCTACCACCA
  AGCTAAATAT ATACCTCTTT CATTTTTCAA TTTTAATCAT TTATTTATTT AATGTGTGTG
  AGAGTTTTGC CTGTGTGTAC ATGTGTGCTC CTGTGTGCCT GTTGTCCACA GAGGTAAGAA
  GCGGTTATTG GATCTCCTGG AAATAGAGTG AGCTATAATG AATGGTTATG AGCTGCCAGG
  TCGATCCTGG AAACTGAACC CAGGTTCTCT GAAAGAACAA CAAATGCTCT TCACCACTGA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38784196	mCV23532891	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss132366943	ENSMUSSNP5009925	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29432587					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70058278 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	within coordinates
Rr251315	regulatory region 251315	416 bp distal
Tssr102659	transcription start site region 102659	789 bp downstream
Tssr102660	transcription start site region 102660	745 bp downstream
Tssr102661	transcription start site region 102661	668 bp downstream
Tssr102662	transcription start site region 102662	254 bp downstream
Tssr102663	transcription start site region 102663	230 bp downstream