rs29433054 SNP Detail

Summary

• ID
  rs29433054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69298638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCTAGAAC TTTGGAATCC CCCACTTACC CAGGAGCATA
  ATAGGGTTTG TTAGGGTGCC CGGAGCTACT GCCATGAGAT GGGGGTAAAG GAGCTGAGAG
  K
  GGGGGCTGCC CAACGCTGGC AGAGCATCTG TAAAGAGAAA GGCTCTGTTA GGTACTGCCA
  GAATCACGCT TCCCCCTAGA ATGGAGTAGT CAGAGGGAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38785393	mCV22780213	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss132355545	ENSMUSSNP5901871	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss323729413	CHEV_11_69221314	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29433054					SNP	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69298638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	707 bp proximal
Gm72933	predicted gene, 72933	1942 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	162 bp proximal
Rr402670	regulatory region 402670	783 bp upstream
Rr402671	regulatory region 402671	1547 bp upstream
Tssr3543	transcription start site region 3543	868 bp downstream
Tssr102455	transcription start site region 102455	934 bp downstream
Tssr102456	transcription start site region 102456	1099 bp upstream
Tssr102457	transcription start site region 102457	1469 bp upstream
Tssr102458	transcription start site region 102458	1862 bp upstream
Tssr102459	transcription start site region 102459	1882 bp upstream
Tssr102460	transcription start site region 102460	1915 bp upstream
Tssr102461	transcription start site region 102461	1958 bp upstream
Tssr102462	transcription start site region 102462	1986 bp upstream
Tssr108660	transcription start site region 108660	1901 bp upstream
Tssr108661	transcription start site region 108661	1042 bp upstream
Tssr108662	transcription start site region 108662	192 bp upstream
Tssr108663	transcription start site region 108663	163 bp upstream
Tssr108664	transcription start site region 108664	1 bp downstream
Tssr108665	transcription start site region 108665	746 bp downstream
Tssr108666	transcription start site region 108666	1334 bp downstream
Tssr108667	transcription start site region 108667	1580 bp downstream
Tssr108668	transcription start site region 108668	1601 bp downstream
Tssr108669	transcription start site region 108669	1616 bp downstream
Tssr108670	transcription start site region 108670	1735 bp downstream