rs29433176 SNP Detail

Summary

• ID
  rs29433176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116426298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG TCTTGTCCTC AGTTTACTGG
  Y
  CCTAGGGAGC CTCCATCTGC TGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38784985	mCV24685538	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29433176					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116426298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	1028 bp distal
Sphk1	sphingosine kinase 1	within coordinates
Tssr3739	transcription start site region 3739	1468 bp upstream
Tssr105970	transcription start site region 105970	1500 bp downstream
Tssr105971	transcription start site region 105971	1418 bp downstream
Tssr105972	transcription start site region 105972	1403 bp downstream
Tssr111938	transcription start site region 111938	1763 bp upstream