rs29433396 SNP Detail

Summary

• ID
  rs29433396
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95723346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTA TTCTTTATGC CATCTGCAGC
  M
  GTCCCCCCTG AGTACCACCC CTCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss38785229	mCV23213490	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss132668268	ENSMUSSNP2470126	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29433396					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95723346 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	955 bp distal
Cpgi3604	CpG island 3604	1151 bp proximal
Phospho1	phosphatase, orphan 1	380 bp downstream
Rr369341	regulatory region 369341	668 bp upstream
Rr369342	regulatory region 369342	1723 bp upstream
Rr455202	regulatory region 455202	1818 bp distal
Rr455203	regulatory region 455203	607 bp distal
Tssr3654	transcription start site region 3654	1976 bp downstream
Tssr104394	transcription start site region 104394	1752 bp downstream
Tssr104395	transcription start site region 104395	1183 bp downstream
Tssr104396	transcription start site region 104396	1147 bp downstream
Tssr104397	transcription start site region 104397	982 bp downstream
Tssr110283	transcription start site region 110283	697 bp upstream
Tssr110284	transcription start site region 110284	1596 bp downstream
Tssr110285	transcription start site region 110285	1615 bp downstream
Tssr110286	transcription start site region 110286	1648 bp downstream